Professor Ruiting Lan

About me

I am a Professor of Medical Microbiology in the School of Biotechnology and Biomolecular Sciences at UNSW Sydney where I teach medical microbiology to science and medical students. I grew up in China and did my undergraduate degree there. I completed my PhD at University of Sydney in 1992 and did my postdoctoral training also at the University of Sydney. I was appointed as a Senior Lecturer at UNSW in 2002 and promoted to Professor in 2018.

Research Contribution

My research addresses how pathogens arise, evolve and cause diseases, and how to identify and track these pathogens. I work on bacterial pathogens that are important to human health, with primary interests in gastrointestinal tract pathogens (pathogenic Escherichia coli, Shigella, Salmonella, Vibrio cholerae) and respiratory tract pathogens (Bordetella pertussis). In general terms, our work focuses on the arms race between human intervention (vaccination and/or antibiotics) and the pathogen response.

In B. pertussis we have shown that epidemic B. pertussis in Australia has undergone changes at genomic and proteomic levels in response to selection from vaccine. In Shigella, we have shown that S. flexneri epidemics in China were due to the emergence and spread of a novel clone that carried both a novel O antigen and multidrug resistance. In Salmonella, we have shown that whole genome sequencing has the power to radically improve outbreak investigation and public health intervention. I invented the the core genome concept which is central to the understanding of bacterial evolution.

We developed the multilevel genome typing (MGT) scheme for Salmonella Typhimurium and host the MGT database at .

For more information about us please visit my lab website .

Selected Publications

Lam, C.,..., R. Lan. (2014) Rapid increase in pertactin-deficient Bordetella pertussis isolates, Australia. Emerging Infect Dis 20:626-633.
Octavia, S., ..., R. Lan. (2015) Delineating community outbreaks of Salmonella enterica serovar Typhimurium using whole genome sequencing. J Clin Microbiol 53:1063-1071.
Jones, M., ..., R. Lan (2017). Population and evolutionary dynamics of Shiga-toxin producing Escherichia coli O157 in a beef herd: A longitudinal study. Environ Microbiol 19: 1836-1844.
Xu, Z. …, R. Lan. (2019) Genomic epidemiology of erythromycin-resistant Bordetella pertussis in China. Emerg Microbes Infect 8:461-470.
Luu, L.D.W., ..., R. Lan (2020). Surfaceome analysis of Australian epidemic Bordetella pertussis reveals potential vaccine antigens. Vaccine 38: 539-548.
Payne, M., ..., R. Lan (2020). Multilevel genome typing: genomics guided scalable resolution typing of microbial pathogens. Eurosurveillance 25: 1900519.

Professional Experience

Postdoc/Research fellow, University of Sydney

Honours & Awards

Guest Professor, Chinese Centre for Disease Control and Prevention
Division Chair, the Australia Society for Microbiology
Fellow of Australian Society for Microbiology

Phone

(+61 2) 9385 2095

E-mail

r.lan@unsw.edu.au

Location

3115, L3 East, Bioscience South E26

Book Chapters | 2018

Lan R; Octavia S, 2018, 'Vaccine driven selection and the changing molecular epidemiology of Bordetella pertussis', in Rohani P; Scarpino S (ed.), Pertussis Epidemiology, Immunology, and Evolution, Oxford University Press, USA, pp. 166 - 180

Book Chapters | 2015

Octavia S; Lan R, 2015, 'Chapter 65 Shigella and Shigellosis Genetics, Epidemiology and Pathogenesis', in Molecular Medical Microbiology, Elsevier, pp. 1147 - 1168,

Book Chapters | 2014

Octavia S; Lan R, 2014, 'Shigella and Shigellosis: Genetics, Epidemiology and Pathogenesis', in Tang Y-W; Sussman M; Liu D; Poxton I; Schwartzman J (ed.), Molecular Medical Microbiology, Three-Volume Set, Academic Press, pp. 1147 - 1168,

Book Chapters | 2014

Octavia S; Lan R, 2014, 'The Family Enterobacteriaceae', in DeLong EF; Lory S; Stackebrandt E; Thompson F (ed.), The Prokaryotes, Springer, pp. 225 - 286

Book Chapters | 2007

Lan R; Reeves PR, 2007, 'Amplified Fragment Length Polymorphism Analysis of Salmonella enterica', in Schatten H; Eisenstark A (ed.), Methods in Molecular Biology, vol. 394: Salmonella: Methods and Protocols, Humana Press, Totawa, Netherlands, pp. 119 - 132

Book Chapters | 2006

Lan R; Reeves PR, 2006, 'Evolution of Enteric Pathogens', in Seifert HS; DiRita VJ (ed.), Evolution of Microbial Pathogens, ASM Press, Washington, DC, pp. 273,
Journal articles | 2024

Bandaranayake S; Williamson S; Stewart J; Payne M; Kaur S; Wang Q; Sintchenko V; Pavic A; Lan R, 2024, 'Genomic diversity of Salmonella enterica serovar Typhimurium isolated from chicken processing facilities in New South Wales, Australia', Frontiers in Microbiology, 15,

Journal articles | 2024

Cheney L; Payne M; Kaur S; Lan R, 2024, 'SaLTy: a novel Staphylococcus aureus Lineage Typer', Microbial Genomics, 10,

Journal articles | 2024

Fu S; Wang Q; Wang R; Zhang Y; Lan R; He F; Yang Q, 2024, 'Corrigendum to “Horizontal transfer of antibiotic resistance genes within the bacterial communities in aquacultural environment” [Sci. Total Environ. 820 (2022) 153286] (Science of the Total Environment (2022) 820, (S0048969722003771), (10.1016/j.scitotenv.2022.153286))', Science of the Total Environment, 922,

Journal articles | 2024

Luo Y; Payne M; Kaur S; Octavia S; Lan R, 2024, 'Genomic evidence of two-staged transmission of the early seventh cholera pandemic', Nature Communications, 15,

Journal articles | 2024

Luu LDW; Rafique R; Payne M; Octavia S; Robson J; Sintchenko V; Lan R, 2024, 'Deciphering Bordetella pertussis epidemiology through culture-independent multiplex amplicon and metagenomic sequencing.', J Clin Microbiol, pp. e0117824,

Journal articles | 2024

Payne M; Hu D; Wang Q; Sullivan G; Graham RM; Rathnayake IU; Jennison AV; Sintchenko V; Lan R, 2024, 'DODGE: automated point source bacterial outbreak detection using cumulative long term genomic surveillance', Bioinformatics, 40,

Journal articles | 2024

Payne M; Williamson S; Wang Q; Zhang X; Sintchenko V; Pavic A; Lan R, 2024, 'Emergence of Poultry-Associated Human Salmonella enterica Serovar Abortusovis Infections, New South Wales, Australia', Emerging Infectious Diseases, 30, pp. 691 - 700,

Journal articles | 2024

Yang C; Lan R; Zhao L; Pu J; Hu D; Yang J; Zhou H; Han L; Ye L; Jin D; Xu J; Liu L, 2024, 'Prevotella copri alleviates hyperglycemia and regulates gut microbiota and metabolic profiles in mice', mSystems, 9,

Journal articles | 2023

Huang Z; Yu K; Lan R; Glenn Morris J; Xiao Y; Ye J; Zhang L; Luo L; Gao H; Bai X; Wang D, 2023, 'Vibrio metschnikovii as an emergent pathogen: analyses of phylogeny and O-antigen and identification of possible virulence characteristics', Emerging Microbes and Infections, 12,

Journal articles | 2023

Lee SA; Liu F; Yuwono C; Phan M; Chong S; Biazik J; Tay ACY; Janitz M; Riordan SM; Lan R; Wehrhahn MC; Zhang L, 2023, 'Emerging Aeromonas enteric infections: their association with inflammatory bowel disease and novel pathogenic mechanisms', Microbiology Spectrum, 11,

Journal articles | 2023

Luo L; Payne M; Wang Q; Kaur S; Rathnayake IU; Graham R; Gall M; Draper J; Martinez E; Octavia S; Tanaka MM; Jennison AV; Sintchenko V; Lan R, 2023, 'Genomic Epidemiology and Multilevel Genome Typing of Australian Salmonella enterica Serovar Enteritidis', Microbiology Spectrum, 11,

Journal articles | 2023

Luo Y; Payne M; Kaur S; Octavia S; Jiang J; Lan R, 2023, 'Emergence and genomic insights of non-pandemic O1 Vibrio cholerae in Zhejiang, China', Microbiology Spectrum, 11,

Journal articles | 2023

Payne M; Xu Z; Hu D; Kaur S; Octavia S; Sintchenko V; Lan R, 2023, 'Genomic epidemiology and multilevel genome typing of Bordetella pertussis', Emerging Microbes and Infections, 12,

Journal articles | 2023

Suyama H; Luu LDW; Zhong L; Raftery MJ; Lan R, 2023, 'Integrating proteomic data with metabolic modeling provides insight into key pathways of Bordetella pertussis biofilms', Frontiers in Microbiology, 14,

Journal articles | 2023

Xu M; Lan R; Qiao L; Lin X; Hu D; Zhang S; Yang J; Zhou J; Ren Z; Li X; Liu G; Liu L; Xu J, 2023, 'Bacteroides vulgatus Ameliorates Lipid Metabolic Disorders and Modulates Gut Microbial Composition in Hyperlipidemic Rats', Microbiology Spectrum, 11,

Journal articles | 2023

Yu K; Huang Z; Lan R; Morris JG; Xiao Y; Fu S; Gao H; Bai X; Li K; Wang D, 2023, 'Genomic Characteristion of Opportunistic Pathogen Kluyvera Reveals a Novel CTX-M Subgroup', Microorganisms, 11,

Journal articles | 2022

Fu S; Wang Q; Wang R; Zhang Y; Lan R; He F; Yang Q, 2022, 'Horizontal transfer of antibiotic resistance genes within the bacterial communities in aquacultural environment', Science of the Total Environment, 820,

Journal articles | 2022

Fu S; Yang Q; Sheng Y; Wang Q; Wu J; Qiu Z; Lan R; Wang Y; Liu Y, 2022, 'Metagenomics combined with comprehensive validation as a public health risk assessment tool for urban and agricultural run-off', Water Research, 209,

Journal articles | 2022

Kaur S; Payne M; Luo L; Octavia S; Tanaka MM; Sintchenko V; Lan R, 2022, 'MGTdb: A web service and database for studying the global and local genomic epidemiology of bacterial pathogens', Database, 2022,

Journal articles | 2022

Liang J; Zhu Z; Lan R; Meng J; Vrancken B; Lu S; Jin D; Yang J; Wang J; Qin T; Pu J; Zhang L; Dong K; Xu M; Tian H; Jiang T; Xu J, 2022, 'Evolutionary and genomic insights into the long-term colonization of Shigella flexneri in animals', Emerging Microbes and Infections, 11, pp. 2069 - 2079,

Journal articles | 2022

Liu L; Xu M; Lan R; Hu D; Li X; Qiao L; Zhang S; Lin X; Yang J; Ren Z; Xu J, 2022, 'Bacteroides vulgatus attenuates experimental mice colitis through modulating gut microbiota and immune responses', Frontiers in Immunology, 13,

Journal articles | 2022

Luo Y; Ye J; Payne M; Hu D; Jiang J; Lan R, 2022, 'Genomic Epidemiology of Vibrio cholerae O139, Zhejiang Province, China, 1994–2018', Emerging Infectious Diseases, 28, pp. 2253 - 2260,

Journal articles | 2022

Luu LDW; Lan R, 2022, 'Rapid Surface Shaving for Proteomic Identification of Novel Surface Antigens for Vaccine Development', , 2414, pp. 47 - 62,

Journal articles | 2022

Wang Y; Luo L; Ji S; Li Q; Wang H; Zhang Z; Mao P; Sun H; Li L; Wang Y; Xu J; Lan R; Ye C, 2022, 'Dissecting Listeria monocytogenes Persistent Contamination in a Retail Market Using Whole-Genome Sequencing', Microbiology Spectrum, 10,

Journal articles | 2022

Xu Z; Hu D; Luu LDW; Octavia S; Keil AD; Sintchenko V; Tanaka MM; Mooi FR; Robson J; Lan R, 2022, 'Genomic dissection of the microevolution of Australian epidemic Bordetella pertussis', Emerging Microbes and Infections, 11, pp. 1460 - 1473,

Journal articles | 2022

Zhang X; Payne M; Kaur S; Lan R, 2022, 'Improved Genomic Identification, Clustering, and Serotyping of Shiga Toxin-Producing Escherichia coli Using Cluster/Serotype-Specific Gene Markers', Frontiers in Cellular and Infection Microbiology, 11, pp. 772574,

Journal articles | 2021

Cheney L; Payne M; Kaur S; Lan R, 2021, 'Multilevel genome typing describes short- And long-term vibrio cholerae molecular epidemiology', mSystems, 6, pp. 10.1128/msystems.00134 - 10.1128/msystems.00121,

Journal articles | 2021

Fu S; Yang Q; Wang Q; Pang B; Lan R; Wei D; Qu B; Liu Y, 2021, 'Continuous genomic surveillance monitored the in vivo evolutionary trajectories of vibrio parahaemolyticus and identified a new virulent genotype', mSystems, 6,

Journal articles | 2021

Liu L; Song L; Deng R; Lan R; Jin W; Tran Van Nhieu G; Cao H; Liu Q; Xiao Y; Li X; Meng G; Ren Z, 2021, 'Citrobacter freundii Activation of NLRP3 Inflammasome via the Type VI Secretion System', Journal of Infectious Diseases, 223, pp. 2174 - 2185,

Journal articles | 2021

Liu L; Zhang L; Zhou H; Yuan M; Hu D; Wang Y; Sun H; Xu J; Lan R, 2021, 'Antimicrobial Resistance and Molecular Characterization of Citrobacter spp. Causing Extraintestinal Infections', Frontiers in Cellular and Infection Microbiology, 11,

Journal articles | 2021

Luo L; Payne M; Kaur S; Hu D; Cheney L; Octavia S; Wang Q; Tanaka MM; Sintchenko V; Lan R, 2021, 'Elucidation of global and national genomic epidemiology of salmonella enterica serovar enteritidis through multilevel genome typing', Microbial Genomics, 7, pp. 000605,

Journal articles | 2021

Luo L; Wang H; Payne M; Liang C; Bai L; Zheng H; Zhang Z; Zhang L; Zhang X; yan G; Zou N; Chen X; Wan Z; Xiong Y; Lan R; Li Q, 2021, 'Comparative genomics of Chinese and international isolates of Escherichia albertii: population structure and evolution of virulence and antimicrobial resistance', Microbial Genomics, 7, pp. 2021.02.01.429068,

Journal articles | 2021

Luo L; Wang H; Payne MJ; Liang C; Bai L; Zheng H; Zhang Z; Zhang L; Zhang X; Yan G; Zou N; Chen X; Wan Z; Xiong Y; Lan R; Li Q, 2021, 'Comparative genomics of Chinese and international isolates of Escherichia albertii: population structure and evolution of virulence and antimicrobial resistance', Microbial Genomics, 7, pp. 000710,

Journal articles | 2021

Luo Y; Wang H; Liang J; Qian H; Ye J; Chen L; Yang X; Chen Z; Wang F; Octavia S; Payne M; Song X; Jiang J; Jin D; Lan R, 2021, 'Population Structure and Multidrug Resistance of Non-O1/Non-O139 Vibrio cholerae in Freshwater Rivers in Zhejiang, China', Microbial Ecology, 82, pp. 319 - 333,

Journal articles | 2021

Luu LDW; Payne M; Zhang X; Luo L; Lan R, 2021, 'Development and comparison of novel multiple cross displacement amplification (MCDA) assays with other nucleic acid amplification methods for SARS-CoV-2 detection', Scientific Reports, 11, pp. 1873,

Journal articles | 2021

Luu LDW; Zhong L; Kaur S; Raftery MJ; Lan R, 2021, 'Comparative Phosphoproteomics of Classical Bordetellae Elucidates the Potential Role of Serine, Threonine and Tyrosine Phosphorylation in Bordetella Biology and Virulence', Frontiers in Cellular and Infection Microbiology, 11,

Journal articles | 2021

Payne M; Octavia S; Luu LDW; Sotomayor-Castillo C; Wang Q; Tay ACY; Sintchenko V; Tanaka MM; Lan R, 2021, 'Enhancing genomics-based outbreak detection of endemic salmonella enterica serovar typhimurium using dynamic thresholds', Microbial Genomics, 7, pp. 000310,

Journal articles | 2021

Safarchi A; Saedi S; Octavia S; Sedaghatpour M; Bolourchi N; Tay CY; Lamichhane B; Shahcheraghi F; Lan R, 2021, 'Evolutionary genomics of recent clinical Bordetella pertussis isolates from Iran: wide circulation of multiple ptxP3 lineages and report of the first ptxP3 filamentous hemagglutinin-negative B. pertussis', Infection, Genetics and Evolution, 93,

Journal articles | 2021

Wang X; Zhou H; Du P; Lan R; Chen D; Dong A; Lin X; Qiu X; Xu S; Ji X; Li M; Hou X; Sun L; Li D; Han L; Li Z, 2021, 'Genomic epidemiology of Corynebacterium striatum from three regions of China: an emerging national nosocomial epidemic', Journal of Hospital Infection, 110, pp. 67 - 75,

Journal articles | 2021

Yu K; Huang Z; Li Y; Fu Q; Lin L; Wu S; Dai H; Cai H; Xiao Y; Lan R; Wang D, 2021, 'Establishment and Application of Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry for Detection of Shewanella Genus', Frontiers in Microbiology, 12,

Journal articles | 2021

Zhang X; Payne M; Nguyen T; Kaur S; Lan R, 2021, 'Cluster-specific gene markers enhance Shigella and Enteroinvasive Escherichia coli in silico serotyping', Microbial Genomics, 7, pp. 2021.01.30.428723,

Journal articles | 2021

Zhang X; Payne M; Nguyen T; Kaur S; Lan R, 2021, 'Cluster-specific gene markers enhance Shigella and enteroinvasive Escherichia coli in silico serotyping', Microbial Genomics, 7, pp. 000704,

Journal articles | 2021

Zhu W; Yang J; Lu S; Lan R; Jin D; Luo XL; Pu J; Wu S; Xu J, 2021, 'Beta- and Novel Delta-Coronaviruses Are Identified from Wild Animals in the Qinghai-Tibetan Plateau, China', Virologica Sinica, 36, pp. 402 - 411,

Journal articles | 2020

Fu S; Wei D; Yang Q; Xie G; Pang B; Wang Y; Lan R; Wang Q; Dong X; Zhang X; Huang J; Feng J; Liu Y, 2020, 'Horizontal plasmid transfer promotes the dissemination of Asian acute hepatopancreatic necrosis disease and provides a novel mechanism for genetic exchange and environmental adaptation', mSystems, 5,

Journal articles | 2020

Fu S; Yang Q; He F; Lan R; Hao J; Ni P; Liu Y; Li R, 2020, 'National safety survey of animal-use commercial probiotics and their spillover effects from farm to humans: An emerging threat to public health', Clinical Infectious Diseases, 70, pp. 2386 - 2395,

Journal articles | 2020

Gong L; Tang N; Chen D; Sun K; Lan R; Zhang W; Zhou H; Yuan M; Chen X; Zhao X; Che J; Bai X; Zhang Y; Xu H; Walsh TR; Lu J; Xu J; Li J; Feng J, 2020, 'A Nosocomial Respiratory Infection Outbreak of Carbapenem-Resistant Escherichia coli ST131 With Multiple Transmissible blaKPC–2 Carrying Plasmids', Frontiers in Microbiology, 11,

Journal articles | 2020

Jayasundara D; Lee E; Octavia S; Lan R; Tanaka MM; Wood JG, 2020, 'Emergence of pertactin-deficient pertussis strains in Australia can be explained by models of vaccine escape', Epidemics, 31, pp. 100388,

Journal articles | 2020

Liu F; Chen S; Luu LDW; Lee SA; Tay ACY; Wu R; Riordan SM; Lan R; Liu L; Zhang L, 2020, 'Analysis of complete Campylobacter concisus genomes identifies genomospecies features, secretion systems and novel plasmids and their association with severe ulcerative colitis', Microbial Genomics,

Journal articles | 2020

Liu L; Qin L; Hao S; Lan R; Xu B; Guo Y; Jiang R; Sun H; Chen X; Lv X; Xu J; Zhao C, 2020, 'Lineage, antimicrobial resistance and virulence of citrobacter spp', Pathogens, 9,

Journal articles | 2020

Loo SL; Ong A; Kyaw W; Thibaut LM; Lan R; Tanaka MM, 2020, 'Nonsynonymous Polymorphism Counts in Bacterial Genomes: a Comparative Examination', Applied and Environmental Microbiology, 87, pp. 1 - 16,

Journal articles | 2020

Luo Y; Huang C; Ye J; Octavia S; Wang H; Dunbar SA; Jin D; Tang YW; Lan R, 2020, 'Comparison of xMAP Salmonella Serotyping Assay With Traditional Serotyping and Discordance Resolution by Whole Genome Sequencing', Frontiers in Cellular and Infection Microbiology, 10,

Journal articles | 2020

Luu LDW; Octavia S; Aitken C; Zhong L; Raftery MJ; Sintchenko V; Lan R, 2020, 'Surfaceome analysis of Australian epidemic Bordetella pertussis reveals potential vaccine antigens', Vaccine, 38, pp. 539 - 548,

Journal articles | 2020

Payne M; Kaur S; Wang Q; Hennessy D; Luo L; Octavia S; Tanaka MM; Sintchenko V; Lan R, 2020, 'Multilevel genome typing: Genomics-guided scalable resolution typing of microbial pathogens', Eurosurveillance, 25, pp. 1900519,

Journal articles | 2020

Sy BM; Lan R; Tree JJ, 2020, 'Early termination of the Shiga toxin transcript generates a regulatory small RNA', Proceedings of the National Academy of Sciences of the United States of America, 117, pp. 25055 - 25065,

Journal articles | 2020

Wai Luu LD; Payne M; Zhang X; Luo L; Lan R, 2020, 'Development and comparison of a novel multiple cross displacement amplification (MCDA) assay with other nucleic acid amplification methods for SARS-CoV-2 detection', ,

Journal articles | 2020

Zhang X; Payne M; Wang Q; Sintchenko V; Lan R, 2020, 'Highly Sensitive and Specific Detection and Serotyping of Five Prevalent Salmonella Serovars by Multiple Cross-Displacement Amplification', Journal of Molecular Diagnostics, 22, pp. 708 - 719,

Journal articles | 2019

Fu S; Hao J; Yang Q; Lan R; Wang Y; Ye S; Liu Y; Li R, 2019, 'Long-distance transmission of pathogenic Vibrio species by migratory waterbirds: a potential threat to the public health', Scientific Reports, 9,

Journal articles | 2019

Gan L; Cao X; Wang Y; Wang Y; Jiang H; Lan R; Xu J; Ye C, 2019, 'Carriage and potential long distance transmission of Listeria monocytogenes by migratory black-headed gulls in Dianchi Lake, Kunming', Emerging Microbes and Infections, 8, pp. 1195 - 1204,

Journal articles | 2019

Kamachi K; Otsuka N; Fumimoto R; Ozawa K; Yao SM; Chiang CS; Luu LDW; Lan R; Shibayama K; Watanabe M, 2019, 'A novel multilocus variable-number tandem repeat analysis for Bordetella parapertussis', Journal of Medical Microbiology, 68, pp. 1671 - 1676,

Journal articles | 2019

Liu S; Feng J; Pu J; Xu X; Lu S; Yang J; Wang Y; Jin D; Du X; Meng X; Luo X; Sun H; Xiong Y; Ye C; Lan R; Xu J, 2019, 'Genomic and molecular characterisation of Escherichia marmotae from wild rodents in Qinghai-Tibet plateau as a potential pathogen', Scientific Reports, 9,

Journal articles | 2019

Luo L; Chen X; Payne M; Cao X; Wang Y; Zhang J; Deng J; Wang H; Zhang Z; Li Q; Lan R; Ye C, 2019, 'Case report: Whole genome sequencing based investigation of maternal-neonatal listeriosis in Sichuan, China', BMC Infectious Diseases, 19, pp. 893,

Journal articles | 2019

Safarchi A; Octavia S; Nikbin VS; Lotfi MN; Zahraei SM; Tay CY; Lamichhane B; Shahcheraghi F; Lan R, 2019, 'Genomic epidemiology of Iranian Bordetella pertussis: 50 years after the implementation of whole cell vaccine', Emerging Microbes and Infections, 8, pp. 1416 - 1427,

Journal articles | 2019

Wang M; Du P; Wang J; Lan R; Huang J; Luo M; Jiang Y; Zeng J; Quan Y; Shi Z; Zheng H, 2019, 'Genomic epidemiology of Streptococcus suis sequence type 7 sporadic infections in the Guangxi Zhuang Autonomous Region of China', Pathogens, 8,

Journal articles | 2019

Wang X; Zhou H; Chen D; Du P; Lan R; Qiu X; Hou X; Liu Z; Sun L; Xu S; Ji X; Li H; Li D; Zhang J; Zeng H; Li Z, 2019, 'Whole-genome sequencing reveals a prolonged and persistent intrahospital transmission of Corynebacterium striatum, an emerging multidrug-resistant pathogen', Journal of Clinical Microbiology, 57,

Journal articles | 2019

Wang Y; Luo L; Li Q; Wang H; Wang Y; Sun H; Xu J; Lan R; Ye C, 2019, 'Genomic dissection of the most prevalent Listeria monocytogenes clone, sequence type ST87, in China', BMC Genomics, 20,

Journal articles | 2019

Xu X; Zhang H; Huang Y; Zhang Y; Wu C; Gao P; Teng Z; Luo X; Peng X; Wang X; Wang D; Pu J; Zhao H; Lu X; Lu S; Ye C; Dong Y; Lan R; Xu J, 2019, 'Beyond a Ribosomal RNA Methyltransferase, the Wider Role of MraW in DNA Methylation, Motility and Colonization in Escherichia coli O157:H7', Frontiers in Microbiology, 10,

Journal articles | 2019

Xu Z; Octavia S; Luu LDW; Payne M; Timms V; Tay CY; Keil AD; Sintchenko V; Guiso N; Lan R, 2019, 'Pertactin-negative and filamentous hemagglutinin-negative Bordetella pertussis, Australia, 2013-2017', Emerging Infectious Diseases, 25, pp. 1196 - 1199,

Journal articles | 2019

Xu Z; Wang Z; Luan Y; Li Y; Liu X; Peng X; Octavia S; Payne M; Lan R, 2019, 'Genomic epidemiology of erythromycin-resistant Bordetella pertussis in China', Emerging Microbes and Infections, 8, pp. 461 - 470,

Journal articles | 2019

Zhang X; Payne M; Lan R, 2019, 'In silico identification of serovar-specific genes for salmonella serotyping', Frontiers in Microbiology, 10, pp. 835,

Journal articles | 2018

Dhakal R; Wang Q; Lan R; Howard P; Sintchenko V, 2018, 'Novel multiplex PCR assay for identification and subtyping of enteroinvasive escherichia coli and differentiation from shigella based on target genes selected by comparative genomics', Journal of Medical Microbiology, 67, pp. 1257 - 1264,

Journal articles | 2018

Li H; Wang P; Lan R; Luo L; Cao X; Wang Y; Wang Y; Li H; Zhang L; Ji S; Ye C, 2018, 'Risk factors and level of Listeria monocytogenes contamination of raw pork in retail markets in China', Frontiers in Microbiology, 9,

Journal articles | 2018

Liu F; Ma R; Tay CYA; Octavia S; Lan R; Chung HKL; Riordan SM; Grimm MC; Leong RW; Tanaka MM; Connor S; Zhang L, 2018, 'Genomic analysis of oral Campylobacter concisus strains identified a potential bacterial molecular marker associated with active Crohn's disease', Emerging Microbes and Infections, 7, pp. 1 - 14,

Journal articles | 2018

Liu L; Chen D; Liu L; Lan R; Hao S; Jin W; Sun H; Wang Y; Liang Y; Xu J, 2018, 'Genetic diversity, multidrug resistance, and virulence of citrobacter freundii from diarrheal patients and healthy individuals', Frontiers in Cellular and Infection Microbiology, 8,

Journal articles | 2018

Luu LDW; Octavia S; Zhong L; Raftery MJ; Sintchenko V; Lan R, 2018, 'Proteomic Adaptation of Australian Epidemic Bordetella pertussis', Proteomics, 18,

Journal articles | 2018

Sotomayor C; Wang Q; Arnott A; Howard P; Hope K; Lan R; Sintchenko V, 2018, 'Novel salmonella enterica serovar typhimurium genotype levels as herald of seasonal salmonellosis epidemics', Emerging Infectious Diseases, 24, pp. 1079 - 1082,

Journal articles | 2018

Wai Luu LD; Octavia S; Zhong L; Raftery MJ; Sintchenko V; Lan R, 2018, 'Comparison of the whole cell proteome and secretome of epidemic bordetella pertussis strains from the 2008–2012 Australian epidemic under sulfate-modulating conditions', Frontiers in Microbiology, 9,

Journal articles | 2017

Ahlstrom C; Muellner P; Lammers G; Jones M; Octavia S; Lan R; Heller J, 2017, 'Shiga toxin-producing Escherichia coli O157 shedding dynamics in an Australian beef herd', Frontiers in Veterinary Science, 4,

Journal articles | 2017

Bai L; Wang L; Yang X; Wang J; Gan X; Wang W; Xu J; Chen Q; Lan R; Fanning S; Li F, 2017, 'Prevalence and molecular characteristics of extended-spectrum ß-lactamase genes in Escherichia coli isolated from diarrheic patients in China', Frontiers in Microbiology, 8, pp. 144,

Journal articles | 2017

Carbonetti NH; von Koenig CHW; Lan R; Jacob-Dubuisson F; Cotter PA; Deora R; Merkel TJ; van Els CA; Locht C; Hozbor D; Rodriguez ME, 2017, 'Highlights of the 11th International Bordetella Symposium: from Basic Biology to Vaccine Development (vol 23, pg 842, 2016)', CLINICAL AND VACCINE IMMUNOLOGY, 24,

Journal articles | 2017

Chen X; Zhao X; Che J; Xiong Y; Xu Y; Zhang L; Lan R; Xia L; Walsh TR; Xu J; Lu J; Li J, 2017, 'Detection and dissemination of the colistin resistance gene, mcr-1, from isolates and faecal samples in China', Journal of Medical Microbiology, 66, pp. 119 - 125,

Journal articles | 2017

Chung HKL; Tay A; Octavia S; Chen J; Liu F; Ma R; Lan R; Riordan SM; Grimm MC; Zhang L, 2017, 'Erratum: Genome analysis of Campylobacter concisus strains from patients with inflammatory bowel disease and gastroenteritis provides new insights into pathogenicity', Scientific reports, 7, pp. 41113,

Journal articles | 2017

Du P; Zheng H; Zhou J; Lan R; Ye C; Jing H; Jin D; Cui Z; Bai X; Liang J; Liu J; Xu L; Zhang W; Chen C; Xu J, 2017, 'Detection of multiple parallel transmission outbreak of streptococcus suis human infection by use of genome epidemiology, China, 2005', Emerging Infectious Diseases, 23, pp. 204 - 211,

Journal articles | 2017

Fu S; Hiley L; Octavia S; Tanaka MM; Sintchenko V; Lan R, 2017, 'Comparative genomics of Australian and international isolates of Salmonella Typhimurium: Correlation of core genome evolution with CRISPR and prophage profiles', Scientific Reports, 7, pp. 9733,

Journal articles | 2017

Jones M; Octavia S; Lammers G; Heller J; Lan R, 2017, 'Population and evolutionary dynamics of Shiga-toxin producing Escherichia coli O157 in a beef herd: A longitudinal study', Environmental Microbiology, 19, pp. 1836 - 1844,

Journal articles | 2017

Liu L; Lan R; Liu L; Wang Y; Zhang Y; Wang Y; Xu J, 2017, 'Antimicrobial resistance and cytotoxicity of Citrobacter spp. in Maanshan Anhui Province, China', Frontiers in Microbiology, 8, pp. 1357,

Journal articles | 2017

Luo L; Zhang Z; Wang H; Wang P; Lan R; Deng J; Miao Y; Wang Y; Wang Y; Xu J; Zhang L; Sun S; Liu X; Zhou Y; Chen X; Li Q; Ye C, 2017, 'A 12-month longitudinal study of Listeria monocytogenes contamination and persistence in pork retail markets in China', Food Control, 76, pp. 66 - 73,

Journal articles | 2017

Luu LDW; Octavia S; Zhong L; Raftery M; Sintchenko V; Lan R, 2017, 'Characterisation of the Bordetella pertussis secretome under different media', Journal of Proteomics, 158, pp. 43 - 51,

Journal articles | 2017

Meng X; Lu S; Wang Y; Lai X-H; Wen Y; Jin D; Yang J; Bai X; Zhang G; Pu J; Lan R; Xu J, 2017, 'Actinomyces vulturis sp. nov., isolated from Gyps himalayensis (vol 67, pg 1720, 2017)', INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 67, pp. 3134 - 3134,

Journal articles | 2017

Meng X; Lu S; Wang Y; Lai XH; Wen Y; Jin D; Yang J; Bai X; Zhang G; Pu J; Lan R; Xu J, 2017, 'Actinomyces vulturis sp. Nov., isolated from gyps himalayensis', International Journal of Systematic and Evolutionary Microbiology, 67, pp. 1720 - 1726,

Journal articles | 2017

Niu L; Lu S; Lai XH; Hu S; Chen C; Zhang G; Yang J; Jin D; Wang Y; Lan R; Lu G; Xie Y; Ye C; Xu J, 2017, 'Streptococcus himalayensis sp. Nov., isolated from the respiratory tract of marmota himalayana', International Journal of Systematic and Evolutionary Microbiology, 67, pp. 256 - 261,

Journal articles | 2017

Octavia S; Wang Q; Tanaka MM; Sintchenko V; Lan R, 2017, 'Genomic heterogeneity of Salmonella enterica serovar Typhimurium bacteriuria from chronic infection', Infection, Genetics and Evolution, 51, pp. 17 - 20,

Journal articles | 2017

Octavia S; Wu SZ; Kaur S; Valinsky L; Marva E; Moran-Gilad J; Lan R, 2017, 'Whole-genome sequencing and comparative genomic analysis of Bordetella pertussis isolates from the 2007–2008 epidemic in Israel', Journal of Infection, 74, pp. 204 - 207,

Journal articles | 2017

Wang Y; Lu L; Lan R; Salazar JK; Liu J; Xu J; Ye C, 2017, 'Isolation and characterization of Listeria species from rodents in natural environments in China', Emerging Microbes and Infections, 6, pp. 1 - 6,

Journal articles | 2016

Carbonetti NH; Von König CHW; Lan R; Jacob-Dubuisson F; Cotter PA; Deora R; Merkel TJ; Van Els CA; Locht C; Hozbor D; Rodriguez ME, 2016, 'Highlights of the 11th international Bordetella symposium: From basic biology to vaccine development', Clinical and Vaccine Immunology, 23, pp. 842 - 850,

Journal articles | 2016

Chan CHS; Octavia S; Sintchenko V; Lan R, 2016, 'SnpFilt: A pipeline for reference-free assembly-based identification of SNPs in bacterial genomes', Computational Biology and Chemistry, 65, pp. 178 - 184,

Journal articles | 2016

Chen D; Gong L; Walsh TR; Lan R; Wang T; Zhang J; Mai W; Ni N; Lu J; Xu J; Li J, 2016, 'Infection by and dissemination of NDM-5-producing Escherichia coli in China', Journal of Antimicrobial Chemotherapy, 71, pp. 563 - 565,

Journal articles | 2016

Chung HKL; Tay A; Octavia S; Chen J; Liu F; Ma R; Lan R; Riordan SM; Grimm MC; Zhang L, 2016, 'Genome analysis of Campylobacter concisus strains from patients with inflammatory bowel disease and gastroenteritis provides new insights into pathogenicity', Scientific Reports, 6, pp. 38442,

Journal articles | 2016

Clarke M; McIntyre PB; Blyth CC; Wood N; Octavia S; Sintchenko V; Giles L; Quinn H; Hill V; Hanly G; Lan R; Marshall HS, 2016, 'The relationship between Bordetella pertussis genotype and clinical severity in Australian children with pertussis', Journal of Infection, 72, pp. 171 - 178,

Journal articles | 2016

Fu S; Octavia S; Wang Q; Tanaka MM; Tay CY; Sintchenko V; Lan R, 2016, 'Evolution of variable number tandem repeats and its relationship with genomic diversity in Salmonella typhimurium', Frontiers in Microbiology, 7, pp. 2002,

Journal articles | 2016

Li H; Lan R; Peng N; Sun J; Zhu Y, 2016, 'High resolution melting curve analysis with MATLAB-based program', Measurement: Journal of the International Measurement Confederation, 90, pp. 178 - 186,

Journal articles | 2016

Liu F; Lee H; Lan R; Zhang L, 2016, 'Zonula occludens toxins and their prophages in Campylobacter species', Gut Pathogens, 8, pp. 43,

Journal articles | 2016

Lu S; Jin D; Wu S; Yang J; Lan R; Bai X; Liu S; Meng Q; Yuan X; Zhou J; Pu J; Chen Q; Dai H; Hu Y; Xiong Y; Ye C; Xu J, 2016, 'Insights into the evolution of pathogenicity of Escherichia coli from genomic analysis of intestinal E. coli of Marmota himalayana in Qinghai-Tibet plateau of China', Emerging Microbes and Infections, 5, pp. 1 - 9,

Journal articles | 2016

Luo Y; Octavia S; Jin D; Ye J; Miao Z; Jiang T; Xia S; Lan R, 2016, 'US Gulf-like toxigenic O1 Vibrio cholerae causing sporadic cholera outbreaks in China', Journal of Infection, 72, pp. 564 - 572,

Journal articles | 2016

Niu L; Lu S; Hu S; Jin D; Lai X; Yang J; Chen C; Wang Y; Bai X; Lan R; Lv G; Xie Y; Ye C; Xu J, 2016, 'Streptococcus halotolerans sp. nov. isolated from the respiratory tract of Marmota himalayana in Qinghai-Tibet plateau of China', International Journal of Systematic and Evolutionary Microbiology, 66, pp. 4211 - 4217,

Journal articles | 2016

Niu L; Lu S; Hu S; Jin D; Lai X; Yangn J; Chen C; Wang Y; Wang Y; Bai X; Lan R; Lv G; Xie Y; Ye C; Xu J, 2016, 'Streptococcus marmotae sp. Nov., isolated from the respiratory tract of marmota himalayana', International Journal of Systematic and Evolutionary Microbiology, 66, pp. 4315 - 4322,

Journal articles | 2016

Phillips A; Sotomayor C; Wang Q; Holmes N; Furlong C; Ward K; Howard P; Octavia S; Lan R; Sintchenko V, 2016, 'Whole genome sequencing of Salmonella Typhimurium illuminates distinct outbreaks caused by an endemic multi-locus variable number tandem repeat analysis type in Australia, 2014', BMC Microbiology, 16, pp. 211,

Journal articles | 2016

Qin T; Zhang W; Liu W; Zhou H; Ren H; Shao Z; Lan R; Xu J, 2016, 'Population structure and minimum core genome typing of Legionella pneumophila', Scientific Reports, 6,

Journal articles | 2016

Qiu X; Bai X; Lan R; Zheng H; Xu J, 2016, 'Novel capsular polysaccharide loci and new diagnostic tools for high-throughput capsular gene typing in Streptococcus suis', Applied and Environmental Microbiology, 82, pp. 7102 - 7112,

Journal articles | 2016

Safarchi A; Octavia S; Luu LDW; Tay CY; Sintchenko V; Wood N; Marshall H; McIntyre P; Lan R, 2016, 'Better colonisation of newly emerged Bordetella pertussis in the co-infection mouse model study', Vaccine, 34, pp. 3967 - 3971,

Journal articles | 2016

Safarchi A; Octavia S; Wu SZ; Kaur S; Sintchenko V; Gilbert GL; Wood N; McIntyre P; Marshall H; Keil AD; Lan R, 2016, 'Genomic dissection of Australian Bordetella pertussis isolates from the 2008-2012 epidemic', Journal of Infection, 72, pp. 468 - 477,

Journal articles | 2015

Bai L; Guo Y; Lan R; Dong Y; Wang W; Hu Y; Gan X; Yan S; Fu P; Pei X; Xu J; Liu X; Li F, 2015, 'Genotypic characterization of Shiga toxin-producing Escherichia coli O157:H7 isolates in food products from china between 2005 and 2010', Food Control, 50, pp. 209 - 214,

Journal articles | 2015

Bai L; Lan R; Zhang X; Cui S; Xu J; Guo Y; Li F; Zhang D, 2015, 'Prevalence of salmonella isolates from chicken and pig slaughterhouses and emergence of ciprofloxacin and cefotaxime co-resistant S. enterica serovar Indiana in Henan, China', PLoS ONE, 10,

Journal articles | 2015

Fu S; Liu Y; Li X; Tu J; Lan R; Tian H, 2015, 'A preliminary stochastic model for managing microorganisms in a recirculating aquaculture system', Annals of Microbiology, 65, pp. 1119 - 1129,

Journal articles | 2015

Fu S; Octavia S; Tanaka MM; Sintchenko V; Lan R, 2015, 'Defining the core genome of salmonella enterica serovar typhimurium for genomic surveillance and epidemiological typing', Journal of Clinical Microbiology, 53, pp. 2530 - 2538,

Journal articles | 2015

Fung CC; Octavia S; Mooney AM; Lan R, 2015, 'Virulence variations in Shigella and enteroinvasive Escherichia coli using the Caenorhabditis elegans model', FEMS Microbiology Letters, 362,

Journal articles | 2015

Liu L; Hao S; Lan R; Wang G; Xiao D; Sun H; Xu J, 2015, 'The type VI secretion system modulates flagellar gene expression and secretion in Citrobacter freundii and contributes to adhesion and cytotoxicity to host cells', Infection and Immunity, 83, pp. 2596 - 2604,

Journal articles | 2015

Liu S; Jin D; Lan R; Wang Y; Meng Q; Dai H; Lu S; Hu S; Xu J, 2015, 'Escherichia marmotae sp. nov., isolated from faeces of Marmota himalayana', International Journal of Systematic and Evolutionary Microbiology, 65, pp. 2130 - 2134,

Journal articles | 2015

Mahendran V; Octavia S; Demirbas OF; Sabrina S; Ma R; Lan R; Riordan SM; Grimm MC; Zhang L, 2015, 'Delineation of genetic relatedness and population structure of oral and enteric Campylobacter concisus strains by analysis of housekeeping genes', Microbiology (United Kingdom), 161, pp. 1600 - 1612,

Journal articles | 2015

Octavia S; Sara J; Lan R, 2015, 'Characterization of a large novel phage-like plasmid in Salmonella enterica serovar Typhimurium', FEMS Microbiology Letters, 362,

Journal articles | 2015

Octavia S; Wang Q; Tanaka MM; Kaur S; Sintchenko V; Lan R, 2015, 'Delineating community outbreaks of Salmonella enterica serovar typhimurium by use of whole-genome sequencing: Insights into genomic variability within an outbreak', Journal of Clinical Microbiology, 53, pp. 1063 - 1071,

Journal articles | 2015

Octavia S; Wang Q; Tanaka MM; Sintchenko V; Lan R, 2015, 'Genomic variability of serial human isolates of salmonella enterica serovar typhimurium associated with prolonged carriage', Journal of Clinical Microbiology, 53, pp. 3507 - 3514,

Journal articles | 2015

Safarchi A; Octavia S; Luu LDW; Tay CY; Sintchenko V; Wood N; Marshall H; McIntyre P; Lan R, 2015, 'Pertactin negative Bordetella pertussis demonstrates higher fitness under vaccine selection pressure in a mixed infection model', Vaccine, 33, pp. 6277 - 6281,

Journal articles | 2015

Wang Y; Jiao Y; Lan R; Xu X; Liu G; Wang X; Zhang L; Pang H; Jin D; Dai H; Yuan X; Zhang W; Xu J; Ye C, 2015, 'Characterization of Listeria monocytogenes isolated from human Listeriosis cases in China', Emerging Microbes and Infections, 4, pp. 1 - 3,

Journal articles | 2015

Wang Y; Wang Y; Lan R; Xu H; Ma A; Li D; Dai H; Yuan X; Xu J; Ye C, 2015, 'Multiple endonuclease restriction real-time loop-mediated isothermal amplification: A novel analytically rapid, sensitive, multiplex loop-mediated isothermal amplification detection technique', Journal of Molecular Diagnostics, 17, pp. 392 - 401,

Journal articles | 2015

Zheng H; Ji S; Liu Z; Lan R; Huang Y; Bai X; Gottschalk M; Xu J, 2015, 'Eight novel capsular polysaccharide synthesis gene loci identified in nontypeable Streptococcus suis isolates', Applied and Environmental Microbiology, 81, pp. 4111 - 4119,

Journal articles | 2014

Bart MJ; Harris SR; Advani A; Arakawa Y; Bottero D; Bouchez V; Cassiday PK; Chiang CS; Dalby T; Fry NK; Gaillard ME; van Gent M; Guiso N; Hallander HO; Harvill ET; He Q; van der Heide HGJ; Heuvelman K; Hozbor DF; Kamachi K; Karataev GI; Lan R; Lutyńska A; Maharjan RP; Mertsola J; Miyamura T; Octavia S; Preston A; Quail MA; Sintchenko V; Stefanelli P; Tondella ML; Tsang RSW; Xu Y; Yao SM; Zhang S; Parkhill J; Mooi FR, 2014, 'Global population structure and evolution of Bordetella pertussis and their relationship with vaccination', mBio, 5,

Journal articles | 2014

Chen C; Zhang W; Zheng H; Lan R; Wang H; Du P; Bai X; Ji S; Meng Q; Jin D; Liu K; Jing H; Ye C; Gao GF; Wang L; Gottschalk EM; Xu J, 2014, 'Erratum: Correction for Chen et al., minimum core genome sequence typing of bacterial pathogens: A unified approach for clinical and public health microbiology (J. Clin. Microbiol. (2014) 52:11 (4120) 10.1128/JCM.02282-14)', Journal of Clinical Microbiology, 52, pp. 4120,

Journal articles | 2014

Dadigamuwage A, 2014, 'Population structure and virulence content of avian pathogenic Escherichia coli isolated from outbreaks in Sri Lanka', Veterinary Microbiology, 168, pp. 403 - 412,

Journal articles | 2014

Knirel YA; Wang J; Luo X; Senchenkova SN; Lan R; Shpirt AM; Du P; Shashkov AS; Zhang N; Xu J; Sun Q, 2014, 'Genetic and structural identification of an O-acyltransferase gene (oacC) responsible for the 3/4-O-acetylation on rhamnose III in Shigella flexneri serotype 6', BMC Microbiology, 14,

Journal articles | 2014

Lam C; Octavia S; Ricafort L; Sintchenko V; Gilbert GL; Wood N; McIntyre P; Marshall H; Guiso N; Keil AD; Lawrence A; Robson J; Hogg G; Lan R, 2014, 'Rapid increase in pertactin-deficient Bordetella pertussis isolates, Australia', Emerging Infectious Diseases, 20, pp. 626 - 633,

Journal articles | 2014

Lam C; Octavia S; Sintchenko V; Gilbert GL; Lan R, 2014, 'Investigating genome reduction of Bordetella pertussis using a multiplex PCR-based reverse line blot assay (mPCR/RLB)', BMC Research Notes, 7,

Journal articles | 2014

Lee H; Ma R; Grimm MC; Riordan SM; Lan R; Zhong L; Raftery M; Zhang L, 2014, 'Examination of the anaerobic growth of Campylobacter concisus strains', International Journal of Microbiology, 2014,

Journal articles | 2014

Li J; Lan R; Xiong Y; Ye C; Yuan M; Liu X; Chen X; Yu D; Liu B; Lin W; Bai X; Wang Y; Sun Q; Wang Y; Zhao H; Meng Q; Chen Q; Zhao A; Xu J, 2014, 'Sequential isolation in a patient of Raoultella planticola and Escherichia coli bearing a novel IS CR1 element carrying blaNDM-1', PLoS ONE, 9,

Journal articles | 2014

Meng Q; Bai X; Zhao A; Lan R; Du H; Wang T; Shi C; Yuan X; Bai X; Ji S; Jin D; Yu B; Wang Y; Sun H; Liu K; Xu J; Xiong Y, 2014, 'Characterization of Shiga toxin-producing Escherichia coli isolated from healthy pigs in China', BMC Microbiology, 14,

Journal articles | 2014

Sun Q; Knirel YA; Lan R; Wang J; Senchenkova SN; Shashkov AS; Wang Y; Wang Y; Luo X; Xu J, 2014, 'Dissemination and serotype modification potential of pSFxv-2, an O-antigen PEtN modification plasmid in Shigella flexneri', Glycobiology, 24, pp. 305 - 313,

Journal articles | 2014

Sun Q; Knirel YA; Wang J; Luo X; Senchenkova SN; Lan R; Shashkov AS; Xu J, 2014, 'Serotype-converting bacteriophage SfII encodes an acyltransferase protein that mediates 6-O-acetylation of GlcNAc in Shigella flexneri O-antigens, conferring on the host a novel O-antigen epitope', Journal of Bacteriology, 196, pp. 3656 - 3666,

Journal articles | 2014

Wang J; Knirel YA; Lan R; Senchenkova SN; Luo X; Perepelov AV; Wang Y; Shashkov AS; Xu J; Sun Q, 2014, 'Identification of an O-acyltransferase gene (oacB) that mediates 3-and 4-O-acetylation of Rhamnose III in Shigella flexneri O antigens', Journal of Bacteriology, 196, pp. 1525 - 1531,

Journal articles | 2014

Wang J; Lan R; Knirel YA; Luo X; Senchenkova SN; Shashkov AS; Xu J; Sun Q, 2014, 'Serological identification and prevalence of a novel o-antigen epitope linked to 3-and 4-o-acetylated rhamnose III of lipopolysaccharide in shigella flexneri', Journal of Clinical Microbiology, 52, pp. 2033 - 2038,

Journal articles | 2014

Zhang N; Lan R; Sun Q; Wang J; Wang Y; Zhang J; Yu D; Hu W; Hu S; Dai H; Du P; Wang H; Xu J, 2014, 'Genomic portrait of the evolution and epidemic spread of a recently emerged multidrug-resistant shigella flexneri clone in China', Journal of Clinical Microbiology, 52, pp. 1119 - 1126,

Journal articles | 2014

Zheng H; Ji S; Lan R; Liu Z; Bai X; Zhang W; Gottschalk M; Xu J, 2014, 'Population analysis of Streptococcus suis Isolates from slaughtered swine by use of minimum core genome sequence typing', Journal of Clinical Microbiology, 52, pp. 3568 - 3572,

Journal articles | 2014

Zheng H; Lan R; Zheng X; Cui Z; Liu Z; Bai X; Ji S; Gottschalk M; Xu J, 2014, 'Comparative genomic hybridization identifies virulence differences in Streptococcus suis', PLoS ONE, 9,

Journal articles | 2013

Bai X; Zhao A; Lan R; Xin Y; Xie H; Meng Q; Jin D; Yu B; Sun H; Lu S; Xu J; Xiong Y, 2013, 'Shiga Toxin-Producing Escherichia coli in Yaks (Bos grunniens) from the Qinghai-Tibetan Plateau, China', PLoS ONE, 8,

Journal articles | 2013

Chen C; Zhang W; Zheng H; Lan R; Wang H; Du P; Bai X; Ji S; Meng Q; Jin D; Liu K; Jing H; Ye C; Gao GF; Wang L; Gottschalk M; Xu J, 2013, 'Minimum core genome sequence typing of bacterial pathogens: A unified approach for clinical and public health microbiology', Journal of Clinical Microbiology, 51, pp. 2582 - 2591,

Journal articles | 2013

Knirel YA; Lan R; Senchenkova SN; Wang J; Shashkov AS; Wang YM; Perepelov AV; Xiong Y; Xu J; Sun QZ, 2013, 'O-antigen structure of Shigella flexneri serotype Yv and effect of the lpt-O gene variation on phosphoethanolamine modification of S. flexneri O-antigens', Glycobiology, 23, pp. 475 - 485,

Journal articles | 2013

Liu Z; Zheng H; Gottschalk M; Bai X; Lan R; Ji S; Liu H; Xu J, 2013, 'Development of Multiplex PCR Assays for the Identification of the 33 Serotypes of Streptococcus suis', PLoS ONE, 8,

Journal articles | 2013

Luo Y; Ye J; Jin D; Ding G; Zhang Z; Mei L; Octavia S; Lan R, 2013, 'Molecular analysis of non-O1/non-O139 Vibrio cholerae isolated from hospitalised patients in China', BMC Microbiology, 13,

Journal articles | 2013

Mahendran V; Tan YS; Riordan SM; Grimm MC; Day AS; Lemberg DA; Octavia S; Lan R; Zhang L, 2013, 'The Prevalence and Polymorphisms of Zonula Occluden Toxin Gene in Multiple Campylobacter concisus Strains Isolated from Saliva of Patients with Inflammatory Bowel Disease and Controls', PLoS ONE, 8,

Journal articles | 2013

Meng Q; Xiong Y; Lan R; Ye C; Wang T; Qi T; Wang Y; Wang H; Bai X; Bai X; Ji S; Jin D; Yuan X; Zhao A; Sun H; Jing H; Xu J, 2013, 'SNP genotyping of enterohemorrhagic Escherichia coli O157: H7 isolates from China and genomic identity of the 1999 Xuzhou outbreak', Infection, Genetics and Evolution, 16, pp. 275 - 281,

Journal articles | 2013

Octavia S; Salim A; Kurniawan J; Lam C; Leung Q; Ahsan S; Reeves PR; Nair GB; Lan R, 2013, 'Population Structure and Evolution of Non-O1/Non-O139 Vibrio cholerae by Multilocus Sequence Typing', PLoS ONE, 8,

Journal articles | 2013

Pang S; Octavia S; Feng L; Liu B; Reeves PR; Lan R; Wang L, 2013, 'Genomic diversity and adaptation of Salmonella enterica serovar Typhimurium from analysis of six genomes of different phage types', BMC Genomics, 14,

Journal articles | 2013

Shashkov AS; Senchenkova SN; Sun QZ; Lan R; Wang J; Perepelov AV; Knirel YA; Xu J, 2013, 'Structure of the O-antigen of a novel Shigella flexneri serotype, 1d (I: 7,8)', Carbohydrate Research, 373, pp. 93 - 96,

Journal articles | 2013

Sun Q; Lan R; Wang J; Xia S; Wang Y; Wang Y; Jin D; Yu B; Knirel YA; Xu J, 2013, 'Identification and Characterization of a Novel Shigella flexneri Serotype Yv in China', PLoS ONE, 8,

Journal articles | 2013

Sun Q; Lan R; Wang Y; Wang J; Wang Y; Li P; Du P; Xu J, 2013, 'Isolation and genomic characterization of SfI, a serotype-converting bacteriophage of Shigella flexneri', BMC Microbiology, 13,

Journal articles | 2013

Sun Q; Lan R; Wang Y; Wang J; Xia S; Wang Y; Zhang J; Yu D; Li Z; Jing H; Xu J, 2013, 'Identification of a divergent O-acetyltransferase gene oac1b from Shigella flexneri serotype 1b strains.', Emerging Microbes & Infections, 1, pp. 1 - 7,

Journal articles | 2013

Xu YM; Xu XF; Lan R; Xiong Y; Ye C; Ren ZH; Liu L; Zhao A; Wu LF; Xu J, 2013, 'An O Island 172 Encoded RNA Helicase Regulates the Motility of Escherichia coli O157:H7', PLoS ONE, 8, pp. Article number e64211,

Journal articles | 2013

Zhao H; Chen C; Xiong Y; Lan R; Wang H; Yao X; Zhang X; Sun H; Zhao A; Bai X; Cheng Q; Ye C; Xu J, 2013, 'Global Transcriptional and Phenotypic Analyses of Escherichia coli O157:H7 Strain Xuzhou21 and Its pO157_Sal Cured Mutant', PLoS ONE, 8, pp. Article numbere65466,

Journal articles | 2012

Bai L; Xia S; Lan R; Liu L; Ye C; Wang Y; Jin D; Cui Z; Jing H; Xiong Y; Bai X; Sun H; Zhang J; Wang L; Xu J, 2012, 'Isolation and characterization of cytotoxic,aggregative Citrobacter freundii.', PLoS One, 7, pp. e33054,

Journal articles | 2012

Grubman A; Seeman T; Polekhina G; Walker SK; Tye H; Wilson T; Lan R; Mitchell HM; Sutton P; Ferrero RL, 2012, '618 Gene Polymorphisms in Host-Adapted Helicobacter pylori: Loss of Type Four Secretion Functions Independent of the cag Pathogenicity Island', Gastroenterology, 142, pp. S - 121,

Journal articles | 2012

Ismail Y; Mahendran V; Octavia S; Day AS; Riordan S; Grimm M; Lan R; Lemberg DA; Tran TAT; Zhang L, 2012, 'Investigation of the enteric pathogenic potential of oral campylobacter concisus strains isolated from patients with inflammatory bowel disease', PLoS One, 7(5), pp. 1 - 11,

Journal articles | 2012

Lam C; Octavia S; Bahrame Z; Sintchenko V; Gilbert GL; Lan R, 2012, 'Selection and emergence of pertussis toxin promoter ptxP3 allele in the evolution of Bordetella pertussis', Infection Genetics and Evolution, 12, pp. 492 - 495,

Journal articles | 2012

Lam C; Octavia S; Reeves PR; Lan R, 2012, 'Multi-locus variable number tandem repeat analysis of 7th pandemic vibrio cholerae.', BMC Microbiology, 12, pp. 1 - 11,

Journal articles | 2012

Luo X; Sun Q; Lan R; Wang J; Li Z; Xia S; Zhang J; Wang Y; Jin D; Wang Y; Wang Y; Yu B; Cui Z; Xu J, 2012, 'Emergence of a novel Shigella flexneri serotype 1d in China.', Diagnostic Microbiology and Infectious Disease, 74, pp. 316 - 319,

Journal articles | 2012

Octavia S; Sintchenko V; Gilbert GL; Lawrence AL; Keil AD; Hogg G; Lan R, 2012, 'Newly emerging clones of bordetella pertussis carrying prn2 and ptxP3 alleles implicated in Australian pertussis epidemic in 2008-2010', Journal of Infectious Diseases, 205, pp. 1220 - 1224,

Journal articles | 2012

Pang S; Octavia S; Reeves PR; Wang Q; Gilbert GL; Sintchenko V; Lan R, 2012, 'Genetic relationships of phage types and single nucleotide polymorphism typing of Salmonella enterica serovar Typhimurium', Journal of Clinical Microbiology, 50, pp. 727 - 734,

Journal articles | 2012

Sun Q; Knirel YA; Lan R; Wang J; Senchenkova SN; Jin D; Shashkov AS; Xia S; Perepelov AV; Chen Q; Wang Y; Wang H; Xu J, 2012, 'A novel plasmid-encoded serotype conversion mechanism through addition of phosphoethanolamine to the O-antigen of shigella flexneri.', PLoS ONE, 7, pp. e46095,

Journal articles | 2012

Wang Y; Zhao A; Zhu R; Lan R; Jin D; Cui Z; Wang Y; Li Z; Wang Y; Xu J; Ye C, 2012, 'Genetic diversity and molecular typing of Listeria monocytogenes in China.', BMC Microbiology, 12, pp. 1 - 9,

Journal articles | 2012

Xiong Y; Wang P; Lan R; Ye C; Wang H; Ren J; Jing H; Wang Y; Zhou Z; Bai X; Cui Z; Luo X; Zhao A; Wang Y; Zhang S; Sun H; Wang L; Xu J, 2012, 'A novel escherichia coli O157:H7 clone causing a major hemolytic uremic syndrome outbreak in China', PLoS ONE, 7, pp. e36144,

Journal articles | 2011

Cashmore AW; Lan R; Macartney K, 2011, 'Bug breakfast in the Bulletin. Pertussis in NSW and its prevention in infants and children.', NSW Public Health Bulletin, 22, pp. 236 - 236

Journal articles | 2011

Cashmore AW; Lan R; Macartney KK, 2011, 'Bug breakfast in the Bulletin. Pertussis in NSW and its prevention in infants and children.', New South Wales public health bulletin, 22, pp. 236,

Journal articles | 2011

Lin FP; Lan R; Sintchenko V; Kong F; Gilbert GL; Coiera E, 2011, 'Computational genome-wide analysis of phylogenetic profiles reveal potential virulence genes of Streptococcus agalactiae', PLoS One, 6, pp. e17964,

Journal articles | 2011

Octavia S; Ch''ng SL; Xia Q; Duong A; Tanaka M; Fukushima H; Lan R, 2011, 'Population structure and evolution of pathogenicity of Yersinia pseudotuberculosis', Applied and Environmental Microbiology, 77, pp. 768 - 775,

Journal articles | 2011

Octavia S; Maharjan RP; Sintchenko V; Stevenson GM; Reeves PR; Gilbert GL; Lan R, 2011, 'Insight into evolution of Bordetella pertussis from comparative genomic analysis: Evidence of vaccine-driven selection', Molecular Biology and Evolution, 28, pp. 707 - 715,

Journal articles | 2011

Reeves PR; Liu B; Zhou Z; Li D; Guo D; Ren Y; Clabots C; Lan R; Johnson J; Wang L, 2011, 'Rates of mutation and host transmission for an escherichia coli clone over 3 years', PLoS One, 6, pp. Article number e26907,

Journal articles | 2011

Sun Q; Lan R; Wang Y; Wang J; Luo X; Zhang S; Li P; Wang Y; Ye C; Jing H; Xu J, 2011, 'Genesis of a novel Shigella flexneri serotype by sequential infection of serotype-converting bacteriophages SfX and SfI', BMC Microbiology, 11, pp. 269,

Journal articles | 2011

Sun Q; Lan R; Wang Y; Zhao A; Zhang S; Wang J; Wang Y; Xia S; Jin D; Cui Z; Zhao H; Li Z; Ye C; Zhang S; Jing H; Xu J, 2011, 'Development of a multiplex PCR assay targeting O-antigen modification genes for molecular serotyping of Shigella flexneri', Journal of Clinical Microbiology, 49, pp. 3766 - 3770,

Journal articles | 2011

Wang P; Xiong Y; Lan R; Ye C; Wang H; Ren J; Jing H; Wang Y; Zhou Z; Cui Z; Zhao H; Chen Y; Jin D; Bai X; Zhao A; Wang Y; Zhang S; Sun H; Li J; Wang T; Wang L; Xu J, 2011, 'PO157-Sal, a novel conjugative plasmid detected in outbreak isolates of Escherichia coli O157:H7', Journal of Clinical Microbiology, 49, pp. 1594 - 1597,

Journal articles | 2011

Zheng X; Zheng H; Lan R; Ye C; Wang Y; Zhang J; Jing H; Chen C; Segura M; Gottschalk M; Xu J, 2011, 'Identification of genes and genomic islands correlated with high pathogenicity in Streptococcus suis using whole genome tiling microarrays', PLoS One, 6, pp. e17987,

Journal articles | 2010

Ballouz S; Lan R; Francis AR; Tanaka M, 2010, 'Conditions for the evolution of gene clusters in bacterial genomes.', PLoS Computational Biology, 6, pp. e1000672 - e1000672,

Journal articles | 2010

Lam C; Octavia S; Reeves PR; Wang L; Lan R, 2010, 'Evolution of seventh cholera pandemic and origin of 1991 epidemic, Latin America', Emerging Infectious Diseases, 16, pp. 1130 - 1132

Journal articles | 2010

Lan R, 2010, 'Bordetella pertussis clones identified by multilocus variable-number tandem-repeat analysis', Emerging Infectious Diseases, 16, pp. 297 - 300

Journal articles | 2010

Octavia S; Lan R, 2010, 'Single nucleotide polymorphism typing of global Salmonella enterica serovar Typhi isolates by use of a hairpin primer real-time PCR assay', Journal of Clinical Microbiology, 48, pp. 3504 - 3509

Journal articles | 2010

Ye C; Lan R; Xia S; Zhang J; Sun Q; Zhang S; Jing H; Jing H; Wang L; Li Z; Zhou Z; Zhao A; Cui Z; Cui J; Jin D; Huang L; Wang Y; Luo X; Bai X; Wang Y; Wang P; Xu Q; Xu J, 2010, 'Emergence of a new multidrug-resistant serotype X variant in an epidemic clone of Shigella flexneri', Journal of Clinical Microbiology, 48, pp. 419 - 426

Journal articles | 2010

Zhou Z; Li X; Liu B; Beutin L; Xu J; Ren Y; Feng L; Lan R; Reeves PR; Wang L, 2010, 'Derivation of Escherichia coli O157:H7 from its O55:H7 precursor', PLoS One, 5, pp. e8700

Journal articles | 2009

Chan W; Maharjan RP; Reeves PR; Sintchenko V; Gilbert GL; Lan R, 2009, 'Rapid and accurate typing of Bordetella pertussis targeting genes encoding acellular vaccine antigens using real time PCR and High Resolution Melt analysis', Journal of Microbiological Methods, 77, pp. 326 - 329

Journal articles | 2009

Lan R; Reeves PR; Octavia S, 2009, 'Population structure, origins and evolution of major Salmonella enterica clones', Infection Genetics and Evolution, 9, pp. 996 - 1005

Journal articles | 2009

Lan R; Reeves PR; Octavia S, 2009, 'WITHDRAWN: Population structure, origins and evolution of major Salmonella enterica clones', Infection, Genetics and Evolution,

Journal articles | 2009

Lin FP; Coiera E; Lan R; Sintchenko V, 2009, 'In silico prioritisation of candidate genes for prokaryotic gene function discovery: an application of phylogenetic profiles.', BMC bioinformatics, 10, pp. 86 - 86,

Journal articles | 2009

Octavia S; Lan R, 2009, 'Multiple-locus variable-number tandem-repeat analysis of Salmonella enterica serovar Typhi', Journal of Clinical Microbiology, 47, pp. 2369 - 2376

Journal articles | 2009

Tay CY; Mitchell HM; Dong Q; Goh K; Dawes IW; Lan R, 2009, 'Population structure of Helicobacter pylori among ethnic groups in Malaysia: Recent acquisition of the bacterium by the Malay population', BMC Microbiology, 9, pp. 126,

Journal articles | 2008

Feng L; Reeves PR; Lan R; Ren Y; Gao C; Zhou Z; Ren Y; Cheng J; Weng W; Wang J; Qian WL; Li D; Wang L, 2008, 'A recalibrated molecular clock and independent origins for the cholera pandemic clones', PLoS One, 3, pp. 4053 - 4063

Journal articles | 2008

Maharjan RP; Gu C; Reeves PR; Sintchenko V; Gilbert GL; Lan R, 2008, 'Genome-wide analysis of single nucleotide polymorphisms in Bordetella pertussis using comparative genomic sequencing', Research in Microbiology, 159, pp. 602 - 608

Journal articles | 2008

Tay CY; Reeves PR; Lan R, 2008, 'Importation of the major pilin TcpA gene and frequent recombination drive the divergence of the Vibrio pathogenicity island in Vibrio cholerae', FEMS Microbiology Letters, 289, pp. 210 - 218

Journal articles | 2007

Lan R; Stevenson G; Donohoe K; Ward LA; Reeves PR, 2007, 'Molecular markers with potential to replace phage typing for Salmonella enterica serovar typhimurium', Journal of Microbiological Methods, 68, pp. 145 - 156

Journal articles | 2007

Octavia S; Lan R, 2007, 'Single-Nucleotide-Polymorphism Typing and Genetic Relationships of Salmonella enterica Serovar Typhi Isolates', Journal of Clinical Microbiology, 45, pp. 3795 - 3801

Journal articles | 2007

Zaghloul L; Tang C; Chin H; Bek EJ; Lan R; Tanaka M, 2007, 'The distribution of insertion sequences in the genome of Shigella flexneri strain 2457T', FEMS Microbiology Letters, 277, pp. 197 - 204,

Journal articles | 2006

Hu H; Lan R; Reeves PR, 2006, 'Adaptation of multilocus sequencing for studying variation within a major clone: Evolutionary relationships of Salmonella enterica serovar typhimurium', Genetics, 172, pp. 743 - 750

Journal articles | 2006

Octavia S; Lan R, 2006, 'Frequent recombination and low level of clonality within Salmonella enterica subspecies I', Microbiology, 152, pp. 1099 - 1108

Journal articles | 2006

Wirth T; Falush D; Lan R; Colles F; Mensa P; Wieler L; Karch H; Reeves PR; Maiden M; Ochman H; Achtman M, 2006, 'Sex and virulence in Escherichia coli: an evolutionary perspective', Molecular Microbiology, 60, pp. 1136 - 1151

Journal articles | 2005

Salim A; Lan R; Reeves PR, 2005, 'Vibrio cholerae pathogenic clones', Emerging Infectious Diseases, 11, pp. 1758 - 1760

Journal articles | 2005

Tominaga A; Lan R; Reeves PR, 2005, 'Evolutionary changes of the flhDC flagellar master operon in Shigella strains', Journal of Bacteriology, 187, pp. 4295 - 4302

Journal articles | 2004

Lan R; Alles MC; Donohoe K; Martinez M; Reeves PR, 2004, 'Molecular evolutionary relationships of enteroinvasive Escherichia coli and Shigella spp', Infection and Immunity, 72, pp. 5080 - 5088

Journal articles | 2004

Rezwan F; Lan R; Reeves PR, 2004, 'Molecular basis of the indole-negative reaction in Shigella strains:extensive damages to the tna operon by insertion sequences', Journal of Bacteriology, 186, pp. 7460 - 7465

Journal articles | 2003

Lan R; Davison AM; Reeves PR; Ward LR, 2003, 'AFLP analysis of Salmonella enterica serovar Typhimurium isolates of phage types DT 9 and DT 135: Diversity within phage types and its epidemiological significance', Microbes and Infection, 5, pp. 841 - 850,

Journal articles | 2003

Lan R; Stevenson G; Reeves PR, 2003, 'Comparison of two major forms of the Shigella virulence plasmid pINV: positive selection is a major force driving the divergence', Infection and Immunity, 71, pp. 6298 - 6306

Journal articles | 2002

Hu H; Lan R; Reeves PR, 2002, 'Fluorescent amplified fragment length polymorphism analysis of Salmonella enterica serovar Typhimurium reveals phage-type-specific markers and potential for microarray typing', Journal of Clinical Microbiology, 40, pp. 3406 - 3415,

Journal articles | 2002

Lan R; Reeves PR, 2002, 'Escherichia coli in disguise: Molecular origins of Shigella', Microbes and Infection, 4, pp. 1125 - 1132,

Journal articles | 2002

Lan R; Reeves PR, 2002, 'Pandemic spread of cholera: Genetic diversity and relationships within the seventh pandemic clone of Vibrio cholerae determined by amplified fragment length polymorphism', Journal of Clinical Microbiology, 40, pp. 172 - 181,

Journal articles | 2001

Karaolis DKR; Lan R; Kaper JB; Reeves PR, 2001, 'Comparison of Vibrio cholerae pathogenicity islands in sixth and seventh pandemic strains', Infection and Immunity, 69, pp. 1947 - 1952,

Journal articles | 2001

Lan R; Lumb B; Ryan D; Reeves PR, 2001, 'Molecular evolution of large virulence plasmid in Shigella clones and enteroinvasive Escherichia coli', Infection and Immunity, 69, pp. 6303 - 6309,

Journal articles | 2001

Lan R; Reeves PR, 2001, 'When does a clone deserve a name? A perspective on bacterial species based on population genetics', Trends in Microbiology, 9, pp. 419 - 424,

Journal articles | 2000

Lan R; Reeves PR, 2000, 'Intraspecies variation in bacterial genomes: The need for a species genome concept', Trends in Microbiology, 8, pp. 396 - 401,

Journal articles | 2000

Lan R; Reeves PR, 2000, 'Unique adaptor design for AFLP fingerprinting', BioTechniques, 29, pp. 745 - 750,

Journal articles | 2000

Pupo GM; Lan R; Reeves PR; Baverstock PR, 2000, 'Population genetics of Escherichia coli in a natural population of native Australian rats', Environmental Microbiology, 2, pp. 594 - 610,

Journal articles | 2000

Pupo GM; Lan R; Reeves PR, 2000, 'Multiple independent origins of Shigella clones of Escherichia coli and convergent evolution of many of their characteristics', Proceedings of the National Academy of Sciences of the United States of America, 97, pp. 10567 - 10572,

Journal articles | 2000

Stevenson G; Lan R; Reeves PR, 2000, 'The colanic acid gene cluster of Salmonella enterica has a complex history', FEMS Microbiology Letters, 191, pp. 11 - 16,

Journal articles | 1999

Byun R; Elbourne LDH; Lan R; Reeves PR, 1999, 'Evolutionary relationships of pathogenic clones of VIbrio cholerae by sequence analysis of four housekeeping genes', Infection and Immunity, 67, pp. 1116 - 1124,

Journal articles | 1998

Lan R; Reeves PR, 1998, 'Molecular Basis of Ribotype Variation in the Seventh Pandemic Clone and its O139 Variant of Vibrio cholerae', Memorias do Instituto Oswaldo Cruz, 93, pp. 595 - 599,

Journal articles | 1998

Lan R; Reeves PR, 1998, 'Recombination between rRNA operons created most of the ribotype variation observed in the seventh pandemic clone of Vibrio cholerae', Microbiology, 144, pp. 1213 - 1221,

Journal articles | 1998

Pérez Luz S; Rodríguez-Valera F; Lan R; Reeves PR, 1998, 'Variation of the ribosomal operon 16S-23S gene spacer region in representatives of Salmonella enterica subspecies', Journal of Bacteriology, 180, pp. 2144 - 2151,

Journal articles | 1998

Reeves PR; Lan R, 1998, 'Cholera in the 1990s', British Medical Bulletin, 54, pp. 611 - 623,

Journal articles | 1997

Pupo GM; Karaolis DKR; Lan R; Reeves PR, 1997, 'Evolutionary relationships among pathogenic and nonpathogenic Escherichia coli strains inferred from multilocus enzyme electrophoresis and mdh sequence studies', Infection and Immunity, 65, pp. 2685 - 2692,

Journal articles | 1996

Lan R; Reeves PR, 1996, 'Gene transfer is a major factor in bacterial evolution', Molecular Biology and Evolution, 13, pp. 47 - 55,

Journal articles | 1995

Karaolis DKR; Lan R; Reeves PR, 1995, 'The sixth and seventh cholera pandemics are due to independent clones separately derived from environmental, nontoxigenic, non-O1 Vibrio cholerae', Journal of Bacteriology, 177, pp. 3191 - 3198,

Journal articles | 1994

Karaolis DKR; Lan R; Reeves PR, 1994, 'Molecular evolution of the seventh-pandemic clone of Vibrio cholerae and its relationship to other pandemic and epidemic V. cholerae isolates', Journal of Bacteriology, 176, pp. 6199 - 6206,

Journal articles | 1994

Karaolis DKR; Lan R; Reeves PR, 1994, 'Sequence variation in Shigella sonnei (Sonnei), a pathogenic clone of Escherichia coli, over four continents and 41 years', Journal of Clinical Microbiology, 32, pp. 796 - 802,

Journal articles | 1994

Lan R; Greenoak GE; Moran C, 1994, 'PYRIMIDINE DIMER INDUCTION AND REMOVAL IN THE EPIDERMIS OF HAIRLESS MICE: INEFFICIENT REPAIR IN THE GENOME OVERALL AND RAPID REPAIR IN THE H‐ras SEQUENCE', Photochemistry and Photobiology, 59, pp. 356 - 361,

Journal articles | 1994

Reeves PR; Farnell L; Lan R, 1994, 'Multicomp: A program for preparing sequence data for phylogenetic analysis', Bioinformatics, 10, pp. 281 - 284,

Journal articles | 1994

Thampapillai G; Lan R; Reeves PR, 1994, 'Molecular evolution in the gnd locus of Salmonella enterica', Molecular Biology and Evolution, 11, pp. 813 - 828
Preprints | 2024

Cheney L; Payne M; Kaur S; McKew G; Lan R, 2024, CharacterisingStaphylococcus aureusgenomic epidemiology with Multilevel Genome Typing, ,

Preprints | 2024

Kaur S; Payne M; Partridge S; Sintchenko V; Lan R, 2024, A dissection of the genomic antimicrobial resistance epidemiology ofSalmonellaTyphimurium,

Preprints | 2024

Payne M; Hu D; Wang Q; Sullivan G; Graham R; Rathnayake I; Jennison A; Sintchenko V; Lan R, 2024, DODGE: Automated point source bacterial outbreak detection using cumulative long term genomic surveillance,

Preprints | 2023

Cheney L; Payne M; Kaur S; Lan R, 2023, SaLTy: a novelStaphylococcus aureusLineage Typer, ,

Preprints | 2023

Payne M; Xu Z; Hu D; Kaur S; Octavia S; Sintchenko V; Lan R, 2023, Genomic epidemiology and multilevel genome typing ofBordetella pertussis, ,

Preprints | 2022

Kaur S; Payne M; Luo L; Octavia S; Tanaka M; Sintchenko V; Lan R, 2022, MGTdb: A web service and database for studying the global and local genomic epidemiology of bacterial pathogens,

Preprints | 2022

Luo L; Payne M; Wang Q; Kaur S; Rathnayake I; Graham R; Gall M; Draper J; Martinez E; Octavia S; Tanaka M; Jennison A; Sintchenko V; Lan R, 2022, Genomic epidemiology and multilevel genome typing of Australian Salmonella enterica serovar Enteritidis,

Preprints | 2022

Suyama H; Luu LDW; Zhong L; Raftery MJ; Lan R, 2022, Integrating proteomic data with metabolic modelling provides insight into key pathways ofBordetella pertussisbiofilms,

Preprints | 2022

Xu Z; Hu D; Wai Luu LD; Octavia S; Keil A; Sintchenko V; Tanaka M; Mooi F; Robson J; Lan R, 2022, Genomic dissection of the microevolution of Australian epidemic Bordetella pertussis,

Preprints | 2020

Luo L; Payne M; Kaur S; Hu D; Cheney L; Octavia S; Wang Q; Tanaka M; Sintchenko V; Lan R, 2020, Elucidation of global and local genomic epidemiology of Salmonella enterica serovar Enteritidis through multilevel genome typing,

Preprints | 2018

Xu X; Zhang H; Huang Y; Zhang Y; Wang X; Wang D; Pu J; Zhao H; Lu X; Lu S; Xiong Y; Ye C; Dong Y; Lan R; Xu J, 2018, Beyond a ribosomal RNA methyltransferase, the wider role of MraW in DNA methylation, motility and colonization inEscherichia coliO157:H7,

Conference Abstracts | 2013

Mahendran V; Lee HY; Tan YS; Riordan SM; Grimm MC; Day AS; Lemberg DA; Octavia S; Lan R; Zhang L, 2013, 'The association between a tight junction toxin gene in Campylobacter concisus and inflammatory bowel disease', in JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, WILEY-BLACKWELL, Vol. 28, pp. 14 - 14,

Preprints |

Gong L; Tang N; Chen D; Sun K; Lan R; Zhang W; Zhou H; Yuan M; Chen X; Zhao X; Che J; Bai X; Zhang Y; Xu H; Walsh TR; Lu J; Xu J; Li J; Feng J, A Nosocomial Respiratory Infection Outbreak of Carbapenem-Non-Susceptible <i>Escherichia coli</i> ST131 with Multiple Transmissible <i>blaKPC-2</i> Carrying Plasmids,

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